PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1DL_56A46D571.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Dof
Protein Properties Length: 121aa    MW: 13309.5 Da    PI: 9.9509
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1DL_56A46D571.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof42.81.1e-1397121529
                 zf-Dof   5 alkcprCdstntkfCyynnyslsqP 29 
                            a +cprCds ntkfCyynnyslsqP
  Traes_1DL_56A46D571.1  97 APNCPRCDSPNTKFCYYNNYSLSQP 121
                            568*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-1283121IPR003851Zinc finger, Dof-type
PfamPF027017.4E-1198121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MAYRGKHLVL ASAALPPSHV YIRLPPLSPL ASASFQILSH HRIPTFPRSP ACLLISSSPI  60
VAMLSSHSES MLAYAAAAGR RAMLVDPRRY RPNVEVAPNC PRCDSPNTKF CYYNNYSLSQ  120
P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0843584e-80AM084358.1 Hordeum vulgare subsp. vulgare dof10 gene for dof zinc finger protein 10, exon 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW5AEY28e-82W5AEY2_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.19e-13Dof family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]